S Banu Ozkan: search on Z-Library

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1

The protein folding problem: when will it be solved?

Ken A Dill, S Banu Ozkan, Thomas R Weikl, John D Chodera, Vincent A Voelz

Journal:

Current Opinion in Structural Biology

Year:

2007

Language:

english

File:

PDF, 131 KB

english, 2007

2

The Protein Folding Problem

Dill, Ken A., Ozkan, S. Banu, Shell, M. Scott, Weikl, Thomas R.

Journal:

Annual Review of Biophysics

Year:

2008

Language:

english

File:

PDF, 2.02 MB

english, 2008

3

OR PRACTICE—R&D Project Portfolio Analysis for the Semiconductor Industry

Gemici-Ozkan, Banu, Wu, S. David, Linderoth, Jeffrey T., Moore, Jeffry E.

Journal:

Operations Research

Year:

2010

Language:

english

File:

PDF, 745 KB

english, 2010

4

Estimating the long-term cost to serve new customers in joint distribution

Sun, Lei, Karwan, Mark H., Gemici-Ozkan, Banu, Pinto, Jose M.

Journal:

Computers & Industrial Engineering

Year:

2015

Language:

english

File:

PDF, 5.19 MB

english, 2015

5

The Role of Conformational Dynamics and Allostery in Modulating Protein Evolution

Campitelli, Paul, Modi, Tushar, Kumar, Sudhir, Ozkan, S. Banu

Journal:

Annual Review of Biophysics

Year:

2020

Language:

english

File:

PDF, 3.47 MB

english, 2020

6

Biotechnological and protein-engineering implications of ancestral protein resurrection

Risso, Valeria A, Sanchez-Ruiz, Jose M, Ozkan, S Banu

Journal:

Current Opinion in Structural Biology

Year:

2018

Language:

english

File:

PDF, 1.27 MB

english, 2018

7

Analysis of Genetic Variation Indicates DNA Shape Involvement in Purifying Selection

Wang, Xiaofei, Zhou, Tianyin, Wunderlich, Zeba, Maurano, Matthew T, DePace, Angela H, Nuzhdin, Sergey V, Rohs, Remo, Ozkan, Banu

Journal:

Molecular Biology and Evolution

Year:

2018

Language:

english

File:

PDF, 1.93 MB

english, 2018

8

Efficacy of Proprioceptive Exercises in Patients with Subacromial Impingement Syndrome

Dilek, Banu, Gulbahar, Selmin, Gundogdu, Mehtap, Ergin, Burcu, Manisali, Metin, Ozkan, Mustafa, Akalin, Elif

Journal:

American Journal of Physical Medicine & Rehabilitation

Year:

2016

Language:

english

File:

PDF, 533 KB

english, 2016

9

Myometrial Cystic Formation after Local Methotrexate Application into Cornual Gestational Sac: A Case Report of an Unexpected Complication

Ozkan, Zehra Sema, Kumbak, Banu, Sapmaz, Ekrem, Simsek, Mehmet

Journal:

Case Reports in Obstetrics and Gynecology

Year:

2011

Language:

english

File:

PDF, 1.71 MB

english, 2011

10

Opposing Pressures of Speed and Efficiency Guide the Evolution of Molecular Machines

Wagoner, Jason A, Dill, Ken A, Ozkan, Banu

Journal:

Molecular Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 808 KB

english, 2019

11

Are Synbiotics added to the Standard Therapy to eradicate Helicobacter pylori in Children Beneficial? A Randomized Controlled Study

Şirvan, Banu N, Usta, Merve K, Kızılkan, Nuray U, Urgancı, Nafiye, Ozkan, Hasan

Journal:

Euroasian Journal of Hepato-Gastroenterology

Year:

2017

Language:

english

File:

PDF, 821 KB

english, 2017

12

Collective Dynamics Differentiates Functional Divergence in Protein Evolution

Glembo, Tyler J., Farrell, Daniel W., Gerek, Z. Nevin, Thorpe, M. F., Ozkan, S. Banu, Nussinov, Ruth

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 837 KB

english, 2012

13

Adaptive BP-Dock: an induced fit docking approach for full receptor flexibility

Bolia, Ashini, Ozkan, Sefika Banu

Journal:

Journal of Chemical Information and Modeling

Year:

2016

Language:

english

File:

PDF, 5.18 MB

english, 2016

14

Accurate tracking of the mutational landscape of diploid hybrid genomes

Tattini, Lorenzo, Tellini, Nicolò, Mozzachiodi, Simone, D’Angiolo, Melania, Loeillet, Sophie, Nicolas, Alain, Liti, Gianni, Ozkan, Banu

Journal:

Molecular Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 9.44 MB

english, 2019

15

Structure and dynamic regulation of Src-family kinases

J. R. Engen, T. E. Wales, J. M. Hochrein, M. A. Meyn, S. Banu Ozkan, I. Bahar, T. E. Smithgall

Journal:

Cellular and Molecular Life Sciences

Year:

2008

Language:

english

File:

PDF, 2.23 MB

english, 2008

16

Application of Linear Response Theory on Protein Networks For Identifying Allosteric Transitions

Gerek, Z. Nevin, Ozkan, S. Banu

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 72 KB

english, 2010

17

Structural Dynamics Flexibility Informs Function and Evolution at a Proteome Scale

Gerek, Z. Nevin, Kumar, Sudhir, Ozkan, S. Banu

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 37 KB

english, 2013

18

Deciphering the Protein Folding Code through Zipping Steps

Zou, Taisong, Woodrum, Brian, Ghirlanda, Giovanna, Sefika Ozkan, Banu

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 39 KB

english, 2013

19

Budd-Chiari syndrome following vaginal delivery in a patient with Crohn’s disease: a case report and review of the literature

Aygun, Banu Kumbak, Pinar, Gulser Goktolga, Sahin, Levent, Ozkan, Zehra Sema, Poyraz, Ahmet Kursad, Aygun, Cem

Journal:

Case Reports in Perinatal Medicine

Year:

2013

Language:

english

File:

PDF, 191 KB

english, 2013

20

Intrinsically Disordered Protein Dynamics Uncovered through Dynamic Flexibility Index (DFI) Analysis

Modi, Tushar, Zerze, Gül H., Mittal, Jeetain, Vaiana, Sara M., Ozkan, S. Banu

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 62 KB

english, 2017

21

Structural dynamics flexibility informs function and evolution at a proteome scale

Nevin Gerek, Zeynep, Kumar, Sudhir, Banu Ozkan, Sefika

Journal:

Evolutionary Applications

Year:

2013

Language:

english

File:

PDF, 883 KB

english, 2013

22

Physics Based Structure Refinement in Casp11 using Geometric Unfolding and Hierarchically Restrained Replica Exchange Molecular Dynamics

Kumar, Avishek, Campitelli, Paul, Banu Ozkan, Sefika, Thorpe, Michael F.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 45 KB

english, 2015

23

Allostery Modulates Resistance Driver Mutations in TEM-1

Modi, Tushar, Ozkan, Banu

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 43 KB

english, 2019

24

Identification of specificity and promiscuity of PDZ domain interactions through their dynamic behavior

Z. Nevin Gerek, Ozlem Keskin, S. Banu Ozkan

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 999 KB

english, 2009

25

Computerized tomographic evaluation of effects of mandibular anterior repositioning on the upper airway: a pilot study

Melahat Ogutcen-Toller, Y.Sinasi Sarac, Nilufer Cakı́r-Ozkan, Duygu Sarac, Banu Sakan

Journal:

The Journal of Prosthetic Dentistry

Year:

2004

Language:

english

File:

PDF, 202 KB

english, 2004

26

Significance of serum vascular endothelial growth factor, insulin-like growth factor-I levels and nitric oxide activity in breast cancer patients

Uǧur Coşkun, Nazan Günel, Banu Sancak, Uǧur Günel, Erhan Onuk, Orhan Bayram, Erdal Yı́lmaz, Sakine Candan, Secil Ozkan

Journal:

Year:

2003

Language:

english

File:

PDF, 145 KB

english, 2003

27

The effects of letrozole and melatonin on surgically induced endometriosis in a rat model: a preliminary study

Gazi Yildirim, Rukset Attar, Ferda Ozkan, Banu Kumbak, Cem Ficicioglu, Narter Yesildaglar

Journal:

Fertility and Sterility

Year:

2010

Language:

english

File:

PDF, 948 KB

english, 2010

28

Electrostatic Effect of the Ribosomal Surface on Nascent Polypeptide Dynamics

Knight, Anders M., Culviner, Peter H., Kurt-Yilmaz, Neşe, Zou, Taisong, Ozkan, S. Banu, Cavagnero, Silvia

Journal:

ACS Chemical Biology

Year:

2013

Language:

english

File:

PDF, 3.21 MB

english, 2013

29

Allostery Modulates Resistance Driver Mutations in TEM-1

Modi, Tushar, Ozkan, Banu

Journal:

Biophysical Journal

Year:

2019

File:

PDF, 43 KB

2019

30

Multiple pilomatricoma with perforation

Emel Fetil, Şebnem Özkan, Turna İlknur, Yasemin Erdem, Banu Lebe, Ali Tahsin Güneş

Journal:

International Journal of Dermatology

Year:

2002

Language:

english

File:

PDF, 157 KB

english, 2002

31

Hoofbeats and zebras: neurodegenerative disorder presenting as a “first episode” of psychosis

Banu Ozkan, Vivek Phutane, Elizabeth Jonas, Cenk Tek, Vinod Srihari

Journal:

General Hospital Psychiatry

Year:

2011

Language:

english

File:

PDF, 239 KB

english, 2011

32

Posterior Corneal Steepening in Posterior Polymorphous Corneal Dystrophy

Bozkurt, Banu, Ozkan, Fehmi, Yilmaz, Mevlut, Okudan, Suleyman

Journal:

Optometry and Vision Science

Year:

2015

Language:

english

File:

PDF, 1.07 MB

english, 2015

33

Could erythropoietin reduce the ovarian damage of cisplatin in female rats?

Dayangan Sayan, Cemile, Tulmac, Ozlem Banu, Karaca, Gökhan, Ozkan, Zehra Sema, Yalcin, Selim, Devrim, Tuba, Dindar Badem, Nermin

Journal:

Gynecological Endocrinology

Year:

2017

Language:

english

File:

PDF, 1.10 MB

english, 2017

34

A Method for the Incorporation of Protein Dynamics into Computational Enzyme Design using the Rosetta Software Suite

Kartchner, Bethany K., Kazan, Ismail C., Ozkan, S. Banu, Mills, Jeremy H.

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 69 KB

2020

35

A flexible docking scheme to explore the binding selectivity of PDZ domains

Z. Nevin Gerek, S. Banu Ozkan

Journal:

Protein Science

Year:

2010

Language:

english

File:

PDF, 711 KB

english, 2010

36

The binding affinities of proteins interacting with the PDZ domain of PICK1

Ashini Bolia, Z. Nevin Gerek, Ozlem Keskin, Sefika Banu Ozkan, Kumlesh K. Dev

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 2.12 MB

english, 2012

37

Primary Stromal Tumor of the Omentum: Report of a Case

Banu Dogan Gun, Mustafa Ozkan Gun, Ziya Karamanoglu

Journal:

Year:

2006

Language:

english

File:

PDF, 197 KB

english, 2006

38

Union of Geometric Constraint-Based Simulations with Molecular Dynamics for Protein Structure Prediction

Glembo, Tyler J., Ozkan, S. Banu

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 648 KB

english, 2010

39

Adenine Nucleotide Translocase Is Acetylated in Vivo in Human Muscle: Modeling Predicts a Decreased ADP Affinity and Altered Control of Oxidative Phosphorylation

Mielke, Clinton, Lefort, Natalie, McLean, Carrie G., Cordova, Jeanine M., Langlais, Paul R., Bordner, Andrew J., Te, Jerez A., Ozkan, S. Banu, Willis, Wayne T., Mandarino, Lawrence J.

Journal:

Year:

2014

Language:

english

File:

PDF, 5.82 MB

english, 2014

40

Umbilical cord Asymmetric Dimethylarginine levels and carotid artery intima-media thickness in newborns born small for gestational age

Dilli, Dilek, Ozkan, Elif, Ozkan, Mehmet Burak, Aydin, Banu, Özyazici, Ahmet, Fettah, Nurdan, Zenciroğlu, Ayşegül, Okumuş, Nurullah

Journal:

Journal of Maternal-Fetal and Neonatal Medicine

Year:

2016

Language:

english

File:

PDF, 776 KB

english, 2016

41

Prognostic Value of Serum IL-18 and Nitric Oxide Activity in Breast Cancer Patients at Operable Stage

Günel, Nazan, Coşkun, Uğur, Sancak, Banu, Hasdemir, Oğuz, Sare, Mustafa, Bayram, Orhan, Celenkoglu, Gokhan, Ozkan, Secil

Journal:

American Journal of Clinical Oncology

Year:

2003

Language:

english

File:

PDF, 226 KB

english, 2003

42

Turkish Standardization of Movement Disorders Society Unified Parkinson's Disease Rating Scale and Unified Dyskinesia Rating Scale

Akbostanci, Muhittin C., Bayram, Ece, Yilmaz, Volkan, Rzayev, Sefer, Özkan, Serhat, Bora Tokcaer, Ayse, Saka, Esen, Durmaz Celik, Fatma N., Özen Barut, Banu, Tüfekcioglu, Zeynep, Acarer, Ahmet, Balaba

Journal:

Movement Disorders Clinical Practice

Year:

2017

Language:

english

File:

PDF, 390 KB

english, 2017

43

Peptide-oleate complexes create novel membrane-bound compartments

Hansen, Jesper S, Tran, Tuan Hiep, Cavalera, Michele, Paul, Sanchari, Chaudhuri, Arunima, Lindkvist-Petersson, Karin, Ho James, C S, Svanborg, Catharina, Ozkan, Banu

Journal:

Molecular Biology and Evolution

Year:

2020

File:

PDF, 8.42 MB

2020

44

Natural selection on the phase-separation properties of FUS during 160 million years of mammalian evolution

Dasmeh, Pouria, Wagner, Andreas, Ozkan, Banu

Journal:

Molecular Biology and Evolution

Year:

2020

File:

PDF, 2.91 MB

2020

45

Bullous Appearance of Pilomatricoma

Emel Fetil, M. Cüneyt Soyal, Adnan Menderes, Banu Lebe, Ali Tahsin Güneş, Sebnem Özkan

Journal:

Dermatologic Surgery

Year:

2003

Language:

english

File:

PDF, 935 KB

english, 2003

46

Hydrogen storage properties of mono- and bidentate MOF structured orotate complexes

Ozturk, Zeynel, Kose, Dursun Ali, Asan, Abdurrahman, Ozturk, Banu, Andac, Omer, Ozkan, Goksel

Journal:

Journal of Materials Research

Year:

2014

Language:

english

File:

PDF, 391 KB

english, 2014

47

Cytomorphometric and Morphological Analysis in Women with Trichomonas vaginalis Infection: Micronucleus Frequency in Exfoliated Cervical Epithelial Cells

Safi Oz, Zehra, Dogan Gun, Banu, Gun, Mustafa Ozkan, Ozdamar, Sukru Oguz

Journal:

Acta Cytologica

Year:

2015

Language:

english

File:

PDF, 435 KB

english, 2015

48

What are the Design Principles for Evolution from Promiscuous to Substrate Specificity?

Modi, Tushar, Risso, Valeria A., Martinez-Rodriguez, Sergio, Gavira, Jose A., Ozkan, S. Banu

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 40 KB

2020

49

CEO turnover and corporate performance relationship in pre- and post- IFRS period: evidence from Turkey

Durukan, Banu, Ozkan, Serdar, Dalkilic, Fatih

Journal:

Journal of Business Economics and Management

Year:

2012

Language:

english

File:

PDF, 416 KB

english, 2012

50

Novel Physics-Based Protein Structure Refinement Method

Kumar, Avishek, Thorpe, Michael F., Banu Ozkan, Sefika

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 35 KB

english, 2013

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